PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29780.m001361
Common NameRCOM_0775730
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 571aa    MW: 61219.9 Da    PI: 9.5667
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29780.m001361genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-0580102123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    + C+ C+k F r  nL+ H r H
  29780.m001361  80 FICEVCNKGFQREQNLQLHRRGH 102
                    89*******************88 PP

2zf-C2H213.20.00027156178123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC++C+k++  +s+ k H +t+
  29780.m001361 156 WKCEKCSKRYAVQSDWKAHSKTC 178
                    58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.3E-679102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.58E-779102No hitNo description
PfamPF121712.8E-580102IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.005280102IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9980102IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
SMARTSM00355150121151IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.1E-5144177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.58E-7151176No hitNo description
SMARTSM00355130156176IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MAAASSSSPF FRAREENHNQ MMQQNSSTTT TSSTAPATAP QKKKRNQPGT PCNFWHFPFA  60
DPDAEVIALS PKTLMATNRF ICEVCNKGFQ REQNLQLHRR GHNLPWKLKQ KTTKEVKRKV  120
YLCPEPTCVH HDASRALGDL TGIKKHYSRK HGEKKWKCEK CSKRYAVQSD WKAHSKTCGT  180
REYRCDCGTL FSRRDSFITH RAFCDALAQE SARHPTGLNT IGSHLYGNNH MSLGLSQVGS  240
PISSLQDQNH SSSNLLRLGS AGAAKFEHII PPSNSTSLPT MPASAFFMSD ANQGSFSNKP  300
LHGLMQLPDL QSATNNSSVA TNLFNLSFFS NNSPGNRISN SDNGNSSTAA TNLVNSGFLS  360
PNPFNGGNGG QGSTIFANNM GDPVGSGIPS LYSNSMQQEN ITPHMSATAL LQKAAQMGST  420
TSSNNNSTLL RGLGSSSSTG NKSDRSPLVS ANFGSSFGNA KIGDHHHQGL GTQIESENQL  480
QGLMNSLANG GSSIFGGGHG QDNGFGGFTS SGISLEQPHN STSFSNVDEA NKLTLDFLGV  540
GGMVRNIGGQ HGINLSALDT EIKSAQANKP F
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2084941e-145AC208494.1 Populus trichocarpa clone JGIACSB265-L05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015576494.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic
SwissprotQ9ZUL31e-140IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLB9S7A80.0B9S7A8_RICCO; Zinc finger protein, putative
STRINGPOPTR_0010s10940.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-117indeterminate(ID)-domain 5